Frequency distribution of k-mers of different occurrences in two pair-end libraries.
The K-mer distribution of Illumina paired-end reads using GenomeScope based on k value of 31. The annotation includes 21,915 protein-coding genes. Based on 114.8 Gb Hi-C data, 99.4% of the assembly were anchored into 24 pseudo-chromosomes. The contig N50 length and scaffold N50 length were 1.80 Mb and 5.05 Mb, respectively. A 647.5 Mb assembly of pompano was generated. The genome size was estimated to be 655 Mb (Fig. We produced 105 Gb of cleaned Illumina reads of genomic DNA, 16.9 Gb Pacbio long reads, and 114.8 Gb cleaned data from a Hi-C library. In the present study, we presented a chromosome-level genome assembly of pompano using Illumina sequencing, Pacbio sequencing, and Hi-C technology (Fig. The Carangidae fish are potential candidates to study resistance to stress.Ī high-quality genome assembly is necessary to understand the functional, ecological and evolutional genomics of this species and other fish in the Carangidae family. Another characteristic of this family is tolerance to high turbidity, rapid pH changes and low dissolved oxygen concentrations and crowding 9. Therefore, fish in this family could be used to analyse the initial evolution status of the sex-determination system. It is speculated that sex chromosomes in this family has not been largely differentiated, distinct from those with well-differentiated sex chromosomes 8. One characteristic of this family is the indistinguishable sex chromosomes 7. The golden pompano is a marine fish in the Carangidae family. Many solutions, including selective breeding 4, identification of trait-associated genes 5, and dietary supplementation 6, are adopted to overcome these problems and improve the production. However, overfishing, diseases, and degeneration of genetic diversity have caused serious economic losses in T. In addition, this fish has been one of the most importantly economic marine fish in China 2. From a biogeographic perspective, this fish readily tolerates different environments. The golden pompano, Trachinotus ovatus (Linnaeus 1758), belongs to Carangiformes and is widely distributed in tropical and subtropical oceans 1. Echeneis naucrates, whole genome shotgun sequencing project. Seriola lalandi isolate YTK006, whole genome shotgun sequencing project. Seriola rivoliana isolate HWSR04, whole genome shotgun sequencing project. Seriola lalandi dorsalis isolate HSWRI2012SDOR001, whole genome shotgun sequencing project. Seriola dumerili isolate Sdu_G_001, whole genome shotgun sequencing project. Seriola quinqueradiata isolate Squ1, whole genome shotgun sequencing project. Whole genome sequencing of female pompano (Trachinotus ovatus) figshare. Trachinotus ovatus, whole genome shotgun sequencing project. The Creative Commons Public Domain Dedication waiver applies to the metadata files associated with this article.
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